.. lpedit works cited file, created by ARichards

Works cited
==============

.. [Ashburner00] M. Ashburner *et al*. *Gene ontology: tool for the unification of biology*,
		 Nature Genetics, 25, 25-29 (2000)

.. [Camacho09] C. Camacho, G. Coulouris, V. Avagyan, N  Ma, J Papadopoulos, K Bealer, & T. L. Madden. *BLAST+: architecture and applications*,
	       BMC bioinformatics, 10, 421 (2009)

.. [Cock09] P. J. Cock *et al*. *Biopython: freely available Python tools for computational molecular biology and bioinformatics*,
	    Bioinformatics, 25, 1422-3 (2009)

.. [Efron07] B Efron & R Tibshirani. *On testing the significance of sets of genes*,
	     Annals of Applied Statistics, 1, 107-129 (2007)

.. [Grabherr11] M.G Grabherr et al. *Full-length transcriptome assembly from RNA-Seq data without a reference genome*,
		Nature biotechnology, 29, 644-52 (2011)

.. [Ng01] A. Y. Ng, M. I. Jordan & Y. Weiss. *On Spectral Clustering: Analysis and an algorithm*,
	  Advances in Neural Information Processing Systems 14, MIT Press, 849-856 (2001)


.. [Patro14] R. Patro, S. M. Mount, & C Kingsford. *Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms*,
             Nature biotechnology, 32, 462-4 (2014)

.. [Subramian05] A. Subramian *et al*. *Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles*,
		 PNAS 102(43), 15545–50 (2005)
	     
.. [Love14] M. I. Love, W. Huber, & S. Anders. *Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2*,
            Genome biology, 15, 550 (2014)
   
.. [UniProtConsortium14] U. Consortium, *Activities at the Universal Protein Resource (UniProt)*,
			 Nucleic acids research, 42, D191-8 (2014)

.. [Zelnik-Manor04] L. Zelnik-Manor & P. Perona, *Self-tuning spectral clustering*,
		    Advances in Neural Information Processing Systems 17, MIT Press, 1601-1608 (2004)