Samples¶

• There are 3 phenotypes: healthy, asthma and rhinitis
• There are 2 tissues: bronchial epithelium, nasal epithelium
• All samples are Caucasian

The following is a summary of the covariate information extracted from downloaded GSE files.

Wed Aug 10 10:02:30 PM 2016
model: ~0+dx+age+gender+tissue 
There were 0 significant probes

Heatmaps¶

Outliers removed¶

Heatmaps of the top 50 genes. The genes are clustered based on normalized values of intensity. The quality control check is that the samples cluster according to phenotype.

Outlier analysis¶

Expression results¶

Outliers removed¶

files¶

• GSE51392.log
• runGSE51392.R