Kicic 2010¶
Basic info¶
Note
The sample data were taken from the GEO website, because they were not properly embedded in the data
Samples¶
| asthma | AR | controls | total |
|---|---|---|---|
| 9 | 0 | 7 | 16 |
The following is a summary of the covariate information extracted from downloaded GSE files.
Gene expression analysis¶
Note
asthma atopic (AA) and (HN) healthy non-atopic were recoded as asthma and control
Tue Aug 09 08:37:07 AM 2016
total files: 1
file: 1/1
file name: GSE18965_series_matrix.txt.gz
status: Public on Mar 31 2010
data processing: R/Bioconductor GC-RMA normalization log2
type: RNA
probes 22215
samples 16
platform_id: GPL96
model: ~0+dx+age+gender
gene filter 22215/22215
There were 6 significant probes
Heatmaps¶
Outliers removed¶
Heatmaps of the top 50 genes. The genes are clustered based on normalized values of intensity. The quality control check is that the samples cluster according to phenotype.
