Yang 2012¶

Basic info¶

GEO: GSE8190

reference: [Yang12]

platform: Agilent-012391 Whole Human Genome Oligo Microarray G4112A

tissue: bronch biopsy

tissue environment: ex-vivo

Note

1:control, 2:atopy only, 3:asthma only, 4:atopy+asthma

Samples¶

asthma	AR	controls	total
14	0	13	27

Gene expression analysis¶

Tue Aug 09 08:28:51 AM 2016
threshold: 4
original size: 43931 x 60 
model: ~0+dx+age+gender+batch+subject 
gene filter 39071/39071
There were 756 significant probesThere were 756 significant probes

Heatmaps¶

Outliers removed¶

Heatmaps of the top 50 genes. The genes are clustered based on normalized values of intensity. The quality control check is that the samples cluster according to phenotype.